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Showing below up to 83 results in range #31 to #113.

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  1. Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data
  2. Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
  3. Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems
  4. Comprehensive evaluation of untargeted metabolomics data processing software in feature detection, quantification and discriminating marker selection
  5. Concepts for Bechmarking Studies:
  6. DMR Calling from BSSEQ:
  7. DMRcaller: a versatile R/Bioconductor package for detection and visualization of differentially methylated regions in CpG and non-CpG contexts
  8. DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data
  9. Data-driven normalization strategies for high-throughput quantitative RT-PCR
  10. Data-driven reverse engineering of signaling pathways using ensembles of dynamic models
  11. Data processing has major impact on the outcome of quantitative label-free LC-MS analysis
  12. Defiant: (DMRs: easy, fast, identification and ANnoTation) identifies differentially Methylated regions from iron-deficient rat hippocampus
  13. Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches
  14. Detecting and overcoming systematic bias in high-throughput screening technologies: a comprehensive review of practical issues and methodological solutions
  15. Distribution-based comprehensive evaluation of methods for differential expression analysis in metatranscriptomics
  16. Efficient computation of steady states in large-scale ODE models of biochemical reaction networks
  17. Efficient parameterization of large-scale dynamic models based on relative measurements
  18. Evaluating supervised and unsupervised background noise correction in human gut microbiome data
  19. Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology
  20. Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data
  21. Evaluation of the microba community profiler for taxonomic profiling of metagenomic datasets from the human gut microbiome
  22. Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data
  23. Fast derivatives of likelihood functionals for ODE based models using adjoint-state method
  24. Funding
  25. Gene set analysis methods: a systematic comparison
  26. Getting started with MediaWiki
  27. Guidelines for Summarizing a Literature Study
  28. Help
  29. Hierarchical optimization for the efficient parametrization of ODE models
  30. Hybrid optimization method with general switching strategy for parameter estimation
  31. Identification and Correction of Additive and Multiplicative Spatial Biases in Experimental High-Throughput Screening
  32. Identifying and quantifying metabolites by scoring peaks of GC-MS data
  33. Improved Peak Detection and Deconvolution of Native Electrospray Mass Spectra from Large Protein Complexes
  34. Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching
  35. LEMMI: a continuous benchmarking platform for metagenomics classifiers
  36. Lessons Learned from Quantitative Dynamical Modeling in Systems Biology
  37. Literature Studies
  38. MS‐Analyzer: preprocessing and data mining services for proteomics applications on the Grid
  39. Machine learning methods for predictive proteomics
  40. MeltDB: a software platform for the analysis and integration of metabolomics experiment data
  41. MetaboAnalyst: a web server for metabolomic data analysis and interpretation
  42. MethCP: Differentially Methylated Region Detection with Change Point Models (bioRxiv)
  43. Microbiome differential abundance methods produce different results across 38 datasets
  44. Mini-batch optimization enables training of ODE models on large-scale datasets
  45. Missing value estimation methods for DNA microarrays
  46. Missing values in mass spectrometry based metabolomics: an undervalued step in the data processing pipeline
  47. Mockrobiota: a public resource for microbiome bioinformatics benchmarking
  48. NOREVA: normalization and evaluation of MS-based metabolomics data
  49. Normalization regarding non-random missing values in high-throughput mass spectrometry data
  50. NormalyzerDE: Online Tool for Improved Normalization of Omics Expression Data and High-Sensitivity Differential Expression Analysis
  51. OpenMS: a flexible open-source software platform for mass spectrometry data analysis
  52. Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis
  53. Optimization and uncertainty analysis of ODE models using second order adjoint sensitivity analysis
  54. Optimization of miRNA-seq data preprocessing
  55. Parameter Estimation and Variable Selection for Big Systems of Linear Ordinary Differential Equations: A Matrix-Based Approach
  56. Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy
  57. Parameter estimation in models of biological oscillators: an automated regularised estimation approach
  58. Parameter estimation with bio-inspired meta-heuristic optimization: modeling the dynamics of endocytosis
  59. Peak alignment using wavelet pattern matching and differential evolution
  60. Peakbin selection in mass spectrometry data using a consensus approach with estimation of distribution algorithms
  61. Performance Evaluation and Online Realization of Data-driven Normalization Methods Used in LC/MS based Untargeted Metabolomics Analysis
  62. Performance of objective functions and optimization procedures for parameter estimation in system biology models
  63. Predicting Breast Cancer Survivability Using Data Mining Techniques
  64. Preprocessing of tandem mass spectrometric data to support automatic protein identification
  65. Prevention, diagnosis and treatment of high-throughput sequencing data pathologies
  66. Project 20 Benchmark Problems for Modelling Intracellular Processes
  67. Project Imputation in Proteomics
  68. Recursive partitioning for missing data imputation in the presence of interaction effects
  69. Recursive partitioning for missing data imputation in the presence of interaction effects.
  70. Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics
  71. Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics.
  72. Robust calibration of hierarchical population models for heterogeneous cell populations
  73. Scalable Parameter Estimation for Genome-Scale Biochemical Reaction Networks
  74. Simultaneous Improvement in the Precision, Accuracy and Robustness of Label-free Proteome Quantification by Optimizing Data Manipulation Chains
  75. Software platform for high-throughput glycomics
  76. TEMPLATE
  77. Test title
  78. Testing structural identifiability by a simple scaling method
  79. The effects of nonignorable missing data on label-free mass spectrometry proteomics experiments
  80. The impact of sample imbalance on identifying differentially expressed genes
  81. Toward a gold standard for benchmarking gene set enrichment analysis
  82. Tracking for parameter and state estimation in possibly misspecified partially observed linear Ordinary Differential Equations
  83. Which missing value imputation method to use in expression profiles: a comparative study and two selection schemes

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