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  1. Benchmarking optimization methods for parameter estimation in large kinetic models
  2. Bioinformatics and Statistics: LC‐MS (/MS) Data Preprocessing for Biomarker Discovery
  3. Chemometric methods in data processing of mass spectrometry-based metabolomics: A review
  4. Comparative evaluation of preprocessing freeware on chromatography/mass spectrometry data for signature discovery
  5. Comparative study of classifiers for human microbiome data
  6. Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16
  7. Comparison of metaheuristic strategies for peakbin selection in proteomic mass spectrometry data
  8. Comparison of peak‐picking workflows for untargeted liquid chromatography/high‐resolution mass spectrometry metabolomics data analysis
  9. Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data
  10. Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
  11. Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems
  12. Comprehensive evaluation of untargeted metabolomics data processing software in feature detection, quantification and discriminating marker selection
  13. Concepts for Bechmarking Studies:
  14. DMR Calling from BSSEQ:
  15. DMRcaller: a versatile R/Bioconductor package for detection and visualization of differentially methylated regions in CpG and non-CpG contexts
  16. DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data
  17. Data-driven normalization strategies for high-throughput quantitative RT-PCR
  18. Data-driven reverse engineering of signaling pathways using ensembles of dynamic models
  19. Data processing has major impact on the outcome of quantitative label-free LC-MS analysis
  20. Defiant: (DMRs: easy, fast, identification and ANnoTation) identifies differentially Methylated regions from iron-deficient rat hippocampus

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