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- Defiant: (DMRs: easy, fast, identification and ANnoTation) identifies differentially Methylated regions from iron-deficient rat hippocampus (15 revisions)
- A general modular framework for gene set enrichment analysis (15 revisions)
- Scalable Parameter Estimation for Genome-Scale Biochemical Reaction Networks (14 revisions)
- Performance of objective functions and optimization procedures for parameter estimation in system biology models (13 revisions)
- MethCP: Differentially Methylated Region Detection with Change Point Models (bioRxiv) (12 revisions)
- Gene set analysis methods: a systematic comparison (11 revisions)
- Benchmark problems for dynamic modeling of intracellular processes (11 revisions)
- Guidelines for Summarizing a Literature Study (10 revisions)
- Benchmarking Projects (10 revisions)
- Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics. (9 revisions)
- Hybrid optimization method with general switching strategy for parameter estimation (9 revisions)
- Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology (9 revisions)
- Benchmarking Studies in Computational Biology (9 revisions)
- Getting started with MediaWiki (6 revisions)
- Project 20 Benchmark Problems for Modelling Intracellular Processes (6 revisions)
- Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems (5 revisions)
- Main Page (4 revisions - redirect page)
- Parameter Estimation and Variable Selection for Big Systems of Linear Ordinary Differential Equations: A Matrix-Based Approach (4 revisions)
- Parameter estimation in models of biological oscillators: an automated regularised estimation approach (4 revisions)
- Mini-batch optimization enables training of ODE models on large-scale datasets (4 revisions)