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Showing below up to 97 results in range #21 to #117.

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21. 20 Benchmark Problem for Modelling Intracellular Processes‏‎ (1 revision - redirect page)
22. Benchmarking Metagenomics Tools for Taxonomic Classification‏‎ (1 revision)
23. Comprehensive benchmarking and ensemble approaches for metagenomic classifiers‏‎ (1 revision)
24. Evaluating supervised and unsupervised background noise correction in human gut microbiome data‏‎ (1 revision)
25. Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching‏‎ (1 revision)
26. Preprocessing of tandem mass spectrometric data to support automatic protein identification‏‎ (1 revision)
27. The impact of sample imbalance on identifying differentially expressed genes‏‎ (1 revision)
28. A Comprehensive Survey of Statistical Approaches for Differential Expression Analysis in Single-Cell RNA Sequencing Studies‏‎ (1 revision)
29. Imputation in Proteomics:‏‎ (1 revision - redirect page)
30. Prevention, diagnosis and treatment of high-throughput sequencing data pathologies‏‎ (1 revision)
31. A benchmark of genetic variant calling pipelines using metagenomic short-read sequencing‏‎ (1 revision)
32. Benchmarking Quantitative Performance in Label-Free Proteomics‏‎ (1 revision)
33. Comprehensive evaluation of untargeted metabolomics data processing software in feature detection, quantification and discriminating marker selection‏‎ (1 revision)
34. Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data‏‎ (1 revision)
35. LEMMI: a continuous benchmarking platform for metagenomics classifiers‏‎ (1 revision)
36. Project 20 Benchmark Models‏‎ (1 revision - redirect page)
37. Concepts for Bechmarking Studies:‏‎ (1 revision)
38. Evaluation of the microba community profiler for taxonomic profiling of metagenomic datasets from the human gut microbiome‏‎ (1 revision)
39. Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases‏‎ (1 revision)
40. DMR Calling from BSSEQ:‏‎ (1 revision)
41. A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling‏‎ (1 revision)
42. Benchmarking of 16S rRNA gene databases using known strain sequences‏‎ (1 revision)
43. Optimization and uncertainty analysis of ODE models using second order adjoint sensitivity analysis‏‎ (1 revision)
44. Funding‏‎ (1 revision)
45. Optimization of miRNA-seq data preprocessing‏‎ (1 revision)
46. A systematic study of normalization methods for Infinium 450K methylation data using whole-genome bisulfite sequencing data‏‎ (1 revision)
47. Bioinformatics and Statistics: LC‐MS (/MS) Data Preprocessing for Biomarker Discovery‏‎ (1 revision)
48. Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics‏‎ (1 revision)
49. MeltDB: a software platform for the analysis and integration of metabolomics experiment data‏‎ (1 revision)
50. Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ‏‎ (1 revision)
51. Data processing has major impact on the outcome of quantitative label-free LC-MS analysis‏‎ (1 revision)
52. MetaboAnalyst: a web server for metabolomic data analysis and interpretation‏‎ (1 revision)
53. Comparative evaluation of preprocessing freeware on chromatography/mass spectrometry data for signature discovery‏‎ (1 revision)
54. An improved algorithm for peak detection in mass spectra based on continuous wavelet transform‏‎ (2 revisions)
55. Comparison of peak‐picking workflows for untargeted liquid chromatography/high‐resolution mass spectrometry metabolomics data analysis‏‎ (2 revisions)
56. Efficient computation of steady states in large-scale ODE models of biochemical reaction networks‏‎ (2 revisions)
57. Testing structural identifiability by a simple scaling method‏‎ (2 revisions)
58. Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data‏‎ (2 revisions)
59. Efficient parameterization of large-scale dynamic models based on relative measurements‏‎ (2 revisions)
60. Predicting Breast Cancer Survivability Using Data Mining Techniques‏‎ (2 revisions)
61. The effects of nonignorable missing data on label-free mass spectrometry proteomics experiments‏‎ (2 revisions)
62. NOREVA: normalization and evaluation of MS-based metabolomics data‏‎ (2 revisions)
63. Normalization regarding non-random missing values in high-throughput mass spectrometry data‏‎ (2 revisions)
64. NormalyzerDE: Online Tool for Improved Normalization of Omics Expression Data and High-Sensitivity Differential Expression Analysis‏‎ (2 revisions)
65. OpenMS: a flexible open-source software platform for mass spectrometry data analysis‏‎ (2 revisions)
66. Which missing value imputation method to use in expression profiles: a comparative study and two selection schemes‏‎ (2 revisions)
67. Project Imputation in Proteomics‏‎ (2 revisions)
68. MS‐Analyzer: preprocessing and data mining services for proteomics applications on the Grid‏‎ (2 revisions)
69. Recursive partitioning for missing data imputation in the presence of interaction effects‏‎ (2 revisions)
70. DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data‏‎ (2 revisions)
71. Machine learning methods for predictive proteomics‏‎ (2 revisions)
72. Recursive partitioning for missing data imputation in the presence of interaction effects.‏‎ (2 revisions)
73. Data-driven normalization strategies for high-throughput quantitative RT-PCR‏‎ (2 revisions)
74. Catalyst: Fast and flexible modeling of reaction networks‏‎ (2 revisions)
75. Data-driven reverse engineering of signaling pathways using ensembles of dynamic models‏‎ (2 revisions)
76. Robust calibration of hierarchical population models for heterogeneous cell populations‏‎ (2 revisions)
77. An Automated Pipeline for High-Throughput Label-Free Quantitative Proteomics‏‎ (2 revisions)
78. Parameter estimation with bio-inspired meta-heuristic optimization: modeling the dynamics of endocytosis‏‎ (2 revisions)
79. Missing values in mass spectrometry based metabolomics: an undervalued step in the data processing pipeline‏‎ (3 revisions)
80. Toward a gold standard for benchmarking gene set enrichment analysis‏‎ (3 revisions)
81. Tracking for parameter and state estimation in possibly misspecified partially observed linear Ordinary Differential Equations‏‎ (3 revisions)
82. A comparative study of evaluating missing value imputation methods in label-free proteomics‏‎ (3 revisions)
83. Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy‏‎ (3 revisions)
84. Chemometric methods in data processing of mass spectrometry-based metabolomics: A review‏‎ (3 revisions)
85. Help‏‎ (3 revisions)
86. Mini-batch optimization enables training of ODE models on large-scale datasets‏‎ (4 revisions)
87. Missing value estimation methods for DNA microarrays‏‎ (4 revisions)
88. Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data‏‎ (4 revisions)
89. Main Page‏‎ (4 revisions - redirect page)
90. Parameter Estimation and Variable Selection for Big Systems of Linear Ordinary Differential Equations: A Matrix-Based Approach‏‎ (4 revisions)
91. Parameter estimation in models of biological oscillators: an automated regularised estimation approach‏‎ (4 revisions)
92. Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems‏‎ (5 revisions)
93. Project 20 Benchmark Problems for Modelling Intracellular Processes‏‎ (6 revisions)
94. Getting started with MediaWiki‏‎ (6 revisions)
95. Hybrid optimization method with general switching strategy for parameter estimation‏‎ (9 revisions)
96. Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology‏‎ (9 revisions)
97. Benchmarking Studies in Computational Biology‏‎ (9 revisions)
98. Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics.‏‎ (9 revisions)
99. Benchmarking Projects‏‎ (10 revisions)
100. Guidelines for Summarizing a Literature Study‏‎ (10 revisions)
101. Benchmark problems for dynamic modeling of intracellular processes‏‎ (11 revisions)
102. Gene set analysis methods: a systematic comparison‏‎ (11 revisions)
103. MethCP: Differentially Methylated Region Detection with Change Point Models (bioRxiv)‏‎ (12 revisions)
104. Performance of objective functions and optimization procedures for parameter estimation in system biology models‏‎ (13 revisions)
105. Scalable Parameter Estimation for Genome-Scale Biochemical Reaction Networks‏‎ (14 revisions)
106. A general modular framework for gene set enrichment analysis‏‎ (15 revisions)
107. Defiant: (DMRs: easy, fast, identification and ANnoTation) identifies differentially Methylated regions from iron-deficient rat hippocampus‏‎ (15 revisions)
108. Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16‏‎ (16 revisions)
109. Benchmarking optimization methods for parameter estimation in large kinetic models‏‎ (16 revisions)
110. Fast derivatives of likelihood functionals for ODE based models using adjoint-state method‏‎ (17 revisions)
111. Accounting for the Multiple Natures of Missing Values in Label-Free Quantitative Proteomics Data Sets to Compare Imputation Strategies‏‎ (19 revisions)
112. Lessons Learned from Quantitative Dynamical Modeling in Systems Biology‏‎ (20 revisions)
113. Hierarchical optimization for the efficient parametrization of ODE models‏‎ (22 revisions)
114. Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis‏‎ (22 revisions)
115. DMRcaller: a versatile R/Bioconductor package for detection and visualization of differentially methylated regions in CpG and non-CpG contexts‏‎ (22 revisions)
116. A comparison of methods for quantifying prediction uncertainty in systems biology‏‎ (48 revisions)
117. Literature Studies‏‎ (232 revisions)

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