User contributions
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- 11:39, 25 February 2020 (diff | hist) . . (-2) . . Gene set analysis methods: a systematic comparison (→Citation)
- 11:39, 25 February 2020 (diff | hist) . . (-2) . . Performance of objective functions and optimization procedures for parameter estimation in system biology models
- 11:39, 25 February 2020 (diff | hist) . . (+111) . . Literature Studies (→Preprocessing high-throughput data)
- 11:39, 25 February 2020 (diff | hist) . . (-40) . . Gene set analysis methods: a systematic comparison (→Gene set analysis methods: a systematic comparison)
- 11:38, 25 February 2020 (diff | hist) . . (-65) . . MethCP: Differentially Methylated Region Detection with Change Point Models (bioRxiv) (→MethCP: Differentially Methylated Region Detection with Change Point Models) (current)
- 11:38, 25 February 2020 (diff | hist) . . (0) . . Performance of objective functions and optimization procedures for parameter estimation in system biology models
- 11:38, 25 February 2020 (diff | hist) . . (-132) . . DMRcaller: a versatile R/Bioconductor package for detection and visualization of differentially methylated regions in CpG and non-CpG contexts (→DMRcaller: a versatile R/Bioconductor package for detection and visualization of differentially methylated regions in CpG and non-CpG contexts) (current)
- 11:38, 25 February 2020 (diff | hist) . . (-17) . . Literature Studies (→Preprocessing high-throughput data)
- 11:38, 25 February 2020 (diff | hist) . . (-129) . . Defiant: (DMRs: easy, fast, identification and ANnoTation) identifies differentially Methylated regions from iron-deficient rat hippocampus (current)
- 11:37, 25 February 2020 (diff | hist) . . (+17) . . Literature Studies (→Preprocessing high-throughput data)
- 11:37, 25 February 2020 (diff | hist) . . (+1,485) . . N Missing values in mass spectrometry based metabolomics: an undervalued step in the data processing pipeline (Created page with " === Citation === Hrydziuszko O., Viant M.R. Missing values in mass spectrometry based metabolomics: an undervalued step in the data processing pipeline (2012). Metabolomics....")
- 11:37, 25 February 2020 (diff | hist) . . (-80) . . DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data (→DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data) (current)
- 11:37, 25 February 2020 (diff | hist) . . (-2) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis
- 11:37, 25 February 2020 (diff | hist) . . (-137) . . m Hierarchical optimization for the efficient parametrization of ODE models (→General Information)
- 11:37, 25 February 2020 (diff | hist) . . (0) . . Hybrid optimization method with general switching strategy for parameter estimation (→Paper name)
- 11:37, 25 February 2020 (diff | hist) . . (+1) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis
- 11:37, 25 February 2020 (diff | hist) . . (-1) . . Guidelines for Summarizing a Literature Study (→Template code) (current)
- 11:35, 25 February 2020 (diff | hist) . . (+12) . . m Hierarchical optimization for the efficient parametrization of ODE models (→Further comments and aspects)
- 11:35, 25 February 2020 (diff | hist) . . (+1) . . Performance of objective functions and optimization procedures for parameter estimation in system biology models
- 11:34, 25 February 2020 (diff | hist) . . (+222) . . Literature Studies (→Imputation methods for missing values)
- 11:34, 25 February 2020 (diff | hist) . . (+184) . . Hierarchical optimization for the efficient parametrization of ODE models (→Further comments and aspects)
- 11:34, 25 February 2020 (diff | hist) . . (-9) . . Literature Studies
- 11:33, 25 February 2020 (diff | hist) . . (+9) . . Literature Studies
- 11:31, 25 February 2020 (diff | hist) . . (+4) . . Literature Studies (→ODE-based Modelling)
- 11:27, 25 February 2020 (diff | hist) . . (-11) . . Literature Studies (→Preprocessing high-throughput data)
- 11:25, 25 February 2020 (diff | hist) . . (+11) . . Literature Studies (→Preprocessing high-throughput data)
- 11:21, 25 February 2020 (diff | hist) . . (0) . . m Hierarchical optimization for the efficient parametrization of ODE models (→Convergence of optimizer)
- 11:03, 25 February 2020 (diff | hist) . . (0) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Paper name)
- 11:02, 25 February 2020 (diff | hist) . . (+1,570) . . N Which missing value imputation method to use in expression profiles: a comparative study and two selection schemes (Created page with " === Citation === G. N., Shaffer, J. R., Blakesley, R. E., Lotz, M. J., and Tseng, G. C. (2008). Which missing value imputation method to use in expression profiles: a compara...")
- 11:01, 25 February 2020 (diff | hist) . . (-123) . . Performance of objective functions and optimization procedures for parameter estimation in system biology models
- 11:01, 25 February 2020 (diff | hist) . . (-105) . . Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems
- 11:01, 25 February 2020 (diff | hist) . . (+106) . . Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems
- 11:00, 25 February 2020 (diff | hist) . . (-75) . . Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems
- 11:00, 25 February 2020 (diff | hist) . . (-11) . . Literature Studies (→Results from Literature)
- 10:59, 25 February 2020 (diff | hist) . . (+139) . . Literature Studies (→Imputation methods for missing values)
- 10:58, 25 February 2020 (diff | hist) . . (-75) . . Hierarchical optimization for the efficient parametrization of ODE models (→General Information)
- 10:58, 25 February 2020 (diff | hist) . . (-1) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis (→Paper name)
- 10:57, 25 February 2020 (diff | hist) . . (-90) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis (→Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis)
- 10:56, 25 February 2020 (diff | hist) . . (+1,518) . . N Recursive partitioning for missing data imputation in the presence of interaction effects. (Created page with " === Citation === Doove, L., Buuren, S. V., and Dusseldorp, E. (2014). Recursive partitioning for missing data imputation in the presence of interaction effects. Computational...")
- 10:55, 25 February 2020 (diff | hist) . . (+145) . . Hierarchical optimization for the efficient parametrization of ODE models (→Computational Efficiency)
- 10:55, 25 February 2020 (diff | hist) . . (+115) . . Literature Studies (→Imputation methods for missing values)
- 10:54, 25 February 2020 (diff | hist) . . (-9) . . Guidelines for Summarizing a Literature Study (→Template code)
- 10:53, 25 February 2020 (diff | hist) . . (+10) . . Literature Studies (→Results from Literature)
- 10:52, 25 February 2020 (diff | hist) . . (-5) . . Normalization regarding non-random missing values in high-throughput mass spectrometry data (current)
- 10:52, 25 February 2020 (diff | hist) . . (+1,569) . . N Normalization regarding non-random missing values in high-throughput mass spectrometry data (Created page with "__NUMBEREDHEADINGS__ == General information == Wang P, Tang H, Zhang H, Whiteaker J, Paulovich AG, Mcintosh M. Normalization regarding non-random missing values in high-throug...")
- 10:51, 25 February 2020 (diff | hist) . . (+428) . . N Performance of objective functions and optimization procedures for parameter estimation in system biology models (Created page with "__NUMBEREDHEADINGS__ == Performance of objective functions and optimisation procedures for parameter estimation in system biology models == Andrea Degasperi, Dirk Fey & Boris...")
- 10:51, 25 February 2020 (diff | hist) . . (-3) . . Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics. (→General information)
- 10:50, 25 February 2020 (diff | hist) . . (+6) . . Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics. (→General information)
- 10:50, 25 February 2020 (diff | hist) . . (+4) . . Literature Studies (→Identifying sets of features (e.g. gene set analyses))
- 10:50, 25 February 2020 (diff | hist) . . (+98) . . Literature Studies (→Preprocessing high-throughput data)
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