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  1. OpenMS: a flexible open-source software platform for mass spectrometry data analysis
  2. Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis
  3. Optimization and uncertainty analysis of ODE models using second order adjoint sensitivity analysis
  4. Optimization of miRNA-seq data preprocessing
  5. Parameter Estimation and Variable Selection for Big Systems of Linear Ordinary Differential Equations: A Matrix-Based Approach
  6. Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy
  7. Parameter estimation in models of biological oscillators: an automated regularised estimation approach
  8. Parameter estimation with bio-inspired meta-heuristic optimization: modeling the dynamics of endocytosis
  9. Peak alignment using wavelet pattern matching and differential evolution
  10. Peakbin selection in mass spectrometry data using a consensus approach with estimation of distribution algorithms
  11. Performance Evaluation and Online Realization of Data-driven Normalization Methods Used in LC/MS based Untargeted Metabolomics Analysis
  12. Performance of objective functions and optimization procedures for parameter estimation in system biology models
  13. Predicting Breast Cancer Survivability Using Data Mining Techniques
  14. Preprocessing of tandem mass spectrometric data to support automatic protein identification
  15. Prevention, diagnosis and treatment of high-throughput sequencing data pathologies
  16. Project 20 Benchmark Problems for Modelling Intracellular Processes
  17. Project Imputation in Proteomics
  18. Recursive partitioning for missing data imputation in the presence of interaction effects
  19. Recursive partitioning for missing data imputation in the presence of interaction effects.
  20. Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics

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