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  1. MetaboAnalyst: a web server for metabolomic data analysis and interpretation
  2. MethCP: Differentially Methylated Region Detection with Change Point Models (bioRxiv)
  3. Microbiome differential abundance methods produce different results across 38 datasets
  4. Mini-batch optimization enables training of ODE models on large-scale datasets
  5. Missing value estimation methods for DNA microarrays
  6. Missing values in mass spectrometry based metabolomics: an undervalued step in the data processing pipeline
  7. Mockrobiota: a public resource for microbiome bioinformatics benchmarking
  8. NOREVA: normalization and evaluation of MS-based metabolomics data
  9. Normalization regarding non-random missing values in high-throughput mass spectrometry data
  10. NormalyzerDE: Online Tool for Improved Normalization of Omics Expression Data and High-Sensitivity Differential Expression Analysis
  11. OpenMS: a flexible open-source software platform for mass spectrometry data analysis
  12. Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis
  13. Optimization and uncertainty analysis of ODE models using second order adjoint sensitivity analysis
  14. Optimization of miRNA-seq data preprocessing
  15. Parameter Estimation and Variable Selection for Big Systems of Linear Ordinary Differential Equations: A Matrix-Based Approach
  16. Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy
  17. Parameter estimation in models of biological oscillators: an automated regularised estimation approach
  18. Parameter estimation with bio-inspired meta-heuristic optimization: modeling the dynamics of endocytosis
  19. Peak alignment using wavelet pattern matching and differential evolution
  20. Peakbin selection in mass spectrometry data using a consensus approach with estimation of distribution algorithms

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