User contributions
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- 14:34, 2 February 2021 (diff | hist) . . (-1) . . NormalyzerDE: Online Tool for Improved Normalization of Omics Expression Data and High-Sensitivity Differential Expression Analysis (→Citation) (current)
- 14:33, 2 February 2021 (diff | hist) . . (-2) . . The effects of nonignorable missing data on label-free mass spectrometry proteomics experiments (→Citation) (current)
- 14:32, 2 February 2021 (diff | hist) . . (-2) . . A comparative study of evaluating missing value imputation methods in label-free proteomics (→Citation) (current)
- 14:31, 2 February 2021 (diff | hist) . . (-16) . . A comparative study of evaluating missing value imputation methods in label-free proteomics
- 14:25, 2 February 2021 (diff | hist) . . (+531) . . N A comparative study of evaluating missing value imputation methods in label-free proteomics (Created page with "=== Citation === O'Brien JJ, Gunawardena HP, Paulo JA, Chen X, Ibrahim JG, Gygi SP, Qaqish BF (2018). The effects of nonignorable missing data on label-free mass spectrometry...")
- 14:23, 2 February 2021 (diff | hist) . . (+118) . . Literature Studies (→Imputation methods for missing values)
- 17:23, 8 November 2020 (diff | hist) . . (+1,645) . . N Simultaneous Improvement in the Precision, Accuracy and Robustness of Label-free Proteome Quantification by Optimizing Data Manipulation Chains (Created page with "__NUMBEREDHEADINGS__ === Citation === Tang J, Fu J, Wang Y, Luo Y, Yang Q, Li B, Tu G, Hong J, Cui X, Chen Y, Yao L. Simultaneous improvement in the precision, accuracy, and r...") (current)
- 17:21, 8 November 2020 (diff | hist) . . (+170) . . Literature Studies (→Omics Workflows)
- 12:56, 9 March 2020 (diff | hist) . . (+104) . . Literature Studies (→Identifying differential features)
- 12:20, 9 March 2020 (diff | hist) . . (+180) . . Literature Studies (→Identifying differential features)
- 13:42, 4 March 2020 (diff | hist) . . (+1,518) . . N The impact of sample imbalance on identifying differentially expressed genes (Created page with "__NUMBEREDHEADINGS__ === Citation === Kun Yang, Jianzhong Li and Hong Gao, The impact of sample imbalance on identifying differentially expressed genes, 2006, BMC Bioinformati...") (current)
- 13:31, 4 March 2020 (diff | hist) . . (+102) . . Literature Studies (→Identifying differential features)
- 16:49, 28 February 2020 (diff | hist) . . (-1) . . Predicting Breast Cancer Survivability Using Data Mining Techniques (→Citation) (current)
- 16:49, 28 February 2020 (diff | hist) . . (+1,786) . . N Predicting Breast Cancer Survivability Using Data Mining Techniques (Created page with "__NUMBEREDHEADINGS__ === Citation === Sarvestani, A. S., Safavi, A. A., Parandeh, N. M., & Salehi, M., Predicting breast cancer survivability using data mining techniques, 20...")
- 16:46, 28 February 2020 (diff | hist) . . (+33) . . Literature Studies
- 16:45, 28 February 2020 (diff | hist) . . (-108) . . Literature Studies (Remove Harper, it is not based on high-througput data)
- 16:41, 28 February 2020 (diff | hist) . . (-2) . . Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data (→Outcome O1) (current)
- 16:41, 28 February 2020 (diff | hist) . . (+2,149) . . N Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data (Created page with "__NUMBEREDHEADINGS__ === Citation === Baolin Wu, Tom Abbott, David Fishman, Walter McMurray, Gil Mor, Kathryn Stone, David Ward, Kenneth Williams, Hongyu Zhao, Comparison of s...")
- 16:18, 28 February 2020 (diff | hist) . . (+30) . . Literature Studies (→Omics Workflows)
- 16:16, 28 February 2020 (diff | hist) . . (+102) . . Literature Studies (→Preprocessing high-throughput data)
- 16:11, 28 February 2020 (diff | hist) . . (+76) . . Literature Studies (→Classification)
- 16:10, 28 February 2020 (diff | hist) . . (+118) . . Literature Studies (→Identifying differential features)
- 16:07, 28 February 2020 (diff | hist) . . (-16) . . Literature Studies (→Identifying sets of features (e.g. gene set analyses))
- 16:06, 28 February 2020 (diff | hist) . . (+149) . . Literature Studies (→Identifying sets of features (e.g. gene set analyses))
- 16:05, 28 February 2020 (diff | hist) . . (+4) . . Literature Studies (→Dimension reduction)
- 16:04, 28 February 2020 (diff | hist) . . (-55) . . Literature Studies (→Identifying differential regions (e.g. DMRs))
- 16:02, 28 February 2020 (diff | hist) . . (+224) . . Literature Studies (→Identifying differential regions (e.g. DMRs))
- 15:59, 28 February 2020 (diff | hist) . . (0) . . Literature Studies (→Dimension reduction)
- 15:58, 28 February 2020 (diff | hist) . . (+1) . . Literature Studies (→Dimension reduction)
- 15:58, 28 February 2020 (diff | hist) . . (+32) . . Literature Studies (→Dimension reduction)
- 15:56, 28 February 2020 (diff | hist) . . (+54) . . Literature Studies (→Dimension reduction)
- 15:57, 25 February 2020 (diff | hist) . . (+596) . . Toward a gold standard for benchmarking gene set enrichment analysis (current)
- 15:41, 25 February 2020 (diff | hist) . . (-1) . . Toward a gold standard for benchmarking gene set enrichment analysis (→Citation)
- 15:40, 25 February 2020 (diff | hist) . . (+159) . . A general modular framework for gene set enrichment analysis (current)
- 15:38, 25 February 2020 (diff | hist) . . (+1,854) . . N Toward a gold standard for benchmarking gene set enrichment analysis (Created page with "__ NUMBEREDHEADINGS__ === Citation === Geistlinger, L., Csaba, G., Santarelli, M., Ramos, M., Schiffer, L., Law, C., ... & Zimmer, R., Toward a gold standard for benchmarking...")
- 15:31, 25 February 2020 (diff | hist) . . (+84) . . Literature Studies (→Identifying sets of features (e.g. gene set analyses))
- 15:26, 25 February 2020 (diff | hist) . . (-1) . . A general modular framework for gene set enrichment analysis (→Design for Outcome O4: Significance assessment)
- 15:26, 25 February 2020 (diff | hist) . . (-1) . . A general modular framework for gene set enrichment analysis (→Further comments and aspects)
- 15:26, 25 February 2020 (diff | hist) . . (-56) . . A general modular framework for gene set enrichment analysis (→References)
- 15:26, 25 February 2020 (diff | hist) . . (+45) . . A general modular framework for gene set enrichment analysis (→Outcome O5: Global approaches)
- 15:24, 25 February 2020 (diff | hist) . . (-70) . . A general modular framework for gene set enrichment analysis (→Study outcomes)
- 15:24, 25 February 2020 (diff | hist) . . (+21) . . A general modular framework for gene set enrichment analysis
- 15:23, 25 February 2020 (diff | hist) . . (+2,070) . . A general modular framework for gene set enrichment analysis
- 14:46, 25 February 2020 (diff | hist) . . (+82) . . A general modular framework for gene set enrichment analysis (→Outcome O2: Transformation of the gene level statistics)
- 14:45, 25 February 2020 (diff | hist) . . (+26) . . A general modular framework for gene set enrichment analysis (→Outcome O2: Transformation of the gene level statistics)
- 14:43, 25 February 2020 (diff | hist) . . (+1,718) . . A general modular framework for gene set enrichment analysis
- 14:10, 25 February 2020 (diff | hist) . . (+431) . . A general modular framework for gene set enrichment analysis
- 14:03, 25 February 2020 (diff | hist) . . (-1) . . A general modular framework for gene set enrichment analysis (→Citation)
- 14:03, 25 February 2020 (diff | hist) . . (+75) . . A general modular framework for gene set enrichment analysis (→Summary)
- 14:00, 25 February 2020 (diff | hist) . . (+1,768) . . N A general modular framework for gene set enrichment analysis (Created page with "__NUMBEREDHEADINGS__ === Citation === M Ackermann and K Strimmer, A general modular framework for gene set enrichment analysis, 2009, BMC Bioinformatics, 10:47, pages etc in a...")
- 13:54, 25 February 2020 (diff | hist) . . (+269) . . Gene set analysis methods: a systematic comparison (current)
- 13:50, 25 February 2020 (diff | hist) . . (+560) . . Gene set analysis methods: a systematic comparison
- 13:35, 25 February 2020 (diff | hist) . . (+631) . . Gene set analysis methods: a systematic comparison
- 13:20, 25 February 2020 (diff | hist) . . (+650) . . Gene set analysis methods: a systematic comparison
- 13:08, 25 February 2020 (diff | hist) . . (-81) . . Gene set analysis methods: a systematic comparison
- 13:03, 25 February 2020 (diff | hist) . . (-77) . . Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16 (→References) (current)
- 13:02, 25 February 2020 (diff | hist) . . (+19) . . Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16 (→Design for Outcome O2)
- 13:01, 25 February 2020 (diff | hist) . . (+33) . . Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16 (→Design for Outcome O1)
- 13:00, 25 February 2020 (diff | hist) . . (-138) . . Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16 (→General aspects)
- 12:59, 25 February 2020 (diff | hist) . . (-2) . . Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16 (→Outcome O2)
- 12:58, 25 February 2020 (diff | hist) . . (0) . . Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16
- 12:56, 25 February 2020 (diff | hist) . . (-70) . . Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16 (→Study outcomes)
- 12:55, 25 February 2020 (diff | hist) . . (-98) . . Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16 (→Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16)
- 12:55, 25 February 2020 (diff | hist) . . (-1) . . Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16 (→Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16)
- 12:54, 25 February 2020 (diff | hist) . . (-1) . . Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16 (→Further outcomes)
- 12:54, 25 February 2020 (diff | hist) . . (+878) . . Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16 (→Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16)
- 12:40, 25 February 2020 (diff | hist) . . (+434) . . Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16 (→Design for Outcome O2)
- 12:23, 25 February 2020 (diff | hist) . . (+29) . . Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16 (→Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16)
- 12:22, 25 February 2020 (diff | hist) . . (+1,779) . . Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16 (→Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16)
- 11:45, 25 February 2020 (diff | hist) . . (+1,665) . . N Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16 (Created page with "__NUMBEREDHEADINGS__ == Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16 == Tintle, N. L., Borchers, B., Brown, M.,...")
- 11:36, 25 February 2020 (diff | hist) . . (+115) . . Literature Studies (→Identifying sets of features (e.g. gene set analyses))
- 10:44, 25 February 2020 (diff | hist) . . (+1,441) . . Gene set analysis methods: a systematic comparison (→Gene set analysis methods: a systematic comparison)
- 10:13, 25 February 2020 (diff | hist) . . (+434) . . Gene set analysis methods: a systematic comparison (→Outcome O1)
- 10:00, 25 February 2020 (diff | hist) . . (+1,130) . . Gene set analysis methods: a systematic comparison (→Study design and evidence level)
- 09:32, 25 February 2020 (diff | hist) . . (+1) . . Literature Studies (→Identifying sets of features (e.g. gene set analyses))
- 09:32, 25 February 2020 (diff | hist) . . (+74) . . Literature Studies (→Identifying sets of features (e.g. gene set analyses))
- 09:14, 25 February 2020 (diff | hist) . . (+1,690) . . N Gene set analysis methods: a systematic comparison (First version)
- 08:59, 25 February 2020 (diff | hist) . . (+64) . . Literature Studies (→Identifying sets of features (e.g. gene set analyses))
- 16:50, 17 January 2020 (diff | hist) . . (+3) . . Literature Studies (→ODE-based Modelling)
- 16:49, 17 January 2020 (diff | hist) . . (+198) . . Literature Studies (→ODE-based Modelling)
- 14:00, 27 June 2019 (diff | hist) . . (-4) . . Literature Studies (→Identifying differential regions (e.g. DMRs))
- 14:00, 27 June 2019 (diff | hist) . . (+4) . . Literature Studies (→Identifying differential regions (e.g. DMRs))
- 13:59, 27 June 2019 (diff | hist) . . (-15) . . Literature Studies (→Identifying differential regions (e.g. DMRs))
- 13:56, 27 June 2019 (diff | hist) . . (+1) . . Literature Studies
- 13:54, 27 June 2019 (diff | hist) . . (+227) . . Literature Studies
- 12:46, 26 June 2019 (diff | hist) . . (+268) . . N Parameter estimation with bio-inspired meta-heuristic optimization: modeling the dynamics of endocytosis (Page created, reference added)
- 12:45, 26 June 2019 (diff | hist) . . (+127) . . Literature Studies (→ODE-based Modelling)
- 12:31, 26 June 2019 (diff | hist) . . (-1) . . Hybrid optimization method with general switching strategy for parameter estimation
- 12:31, 26 June 2019 (diff | hist) . . (+1,559) . . N Hybrid optimization method with general switching strategy for parameter estimation (Page created, reference added)
- 08:20, 18 June 2019 (diff | hist) . . (-1) . . Benchmarking optimization methods for parameter estimation in large kinetic models (→Outcome O5) (current)
- 08:19, 18 June 2019 (diff | hist) . . (-7) . . Benchmarking optimization methods for parameter estimation in large kinetic models
- 08:19, 18 June 2019 (diff | hist) . . (-2) . . Benchmarking optimization methods for parameter estimation in large kinetic models (→Outcome O1)
- 08:19, 18 June 2019 (diff | hist) . . (-1) . . Benchmarking optimization methods for parameter estimation in large kinetic models (→General aspects)
- 08:18, 18 June 2019 (diff | hist) . . (0) . . Benchmarking optimization methods for parameter estimation in large kinetic models (→Further comments and aspects)
- 08:18, 18 June 2019 (diff | hist) . . (-1) . . Benchmarking optimization methods for parameter estimation in large kinetic models (→Further comments and aspects)
- 08:00, 18 June 2019 (diff | hist) . . (+188) . . Benchmarking optimization methods for parameter estimation in large kinetic models
- 07:55, 18 June 2019 (diff | hist) . . (+414) . . Benchmarking optimization methods for parameter estimation in large kinetic models
- 07:50, 18 June 2019 (diff | hist) . . (0) . . Benchmarking optimization methods for parameter estimation in large kinetic models (→Summary)
- 07:50, 18 June 2019 (diff | hist) . . (+86) . . Benchmarking optimization methods for parameter estimation in large kinetic models (→Summary)
- 07:49, 18 June 2019 (diff | hist) . . (-21) . . Benchmarking optimization methods for parameter estimation in large kinetic models (→Paper name)
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