User contributions
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- 14:43, 25 February 2020 (diff | hist) . . (+62) . . Benchmark problems for dynamic modeling of intracellular processes (→Summary)
- 14:41, 25 February 2020 (diff | hist) . . (-71) . . Benchmark problems for dynamic modeling of intracellular processes (→Study outcomes)
- 14:41, 25 February 2020 (diff | hist) . . (+162) . . Benchmark problems for dynamic modeling of intracellular processes (→Summary)
- 14:40, 25 February 2020 (diff | hist) . . (+1,690) . . Benchmark problems for dynamic modeling of intracellular processes
- 14:39, 25 February 2020 (diff | hist) . . (+102) . . Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology (→Study outcomes)
- 14:38, 25 February 2020 (diff | hist) . . (+18) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis (→Summary)
- 14:38, 25 February 2020 (diff | hist) . . (+18) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis (→Material and methods)
- 14:37, 25 February 2020 (diff | hist) . . (+34) . . Literature Studies (→Imputation methods for missing values)
- 14:36, 25 February 2020 (diff | hist) . . (+1,365) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis (→Introduction)
- 14:32, 25 February 2020 (diff | hist) . . (+1,547) . . N Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data (Created page with "__NUMBEREDHEADINGS__ === Citation === Tsuji J, Weng Z. Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data....") (current)
- 14:31, 25 February 2020 (diff | hist) . . (-70) . . Missing value estimation methods for DNA microarrays (→Study outcomes)
- 14:31, 25 February 2020 (diff | hist) . . (+1,231) . . N Missing value estimation methods for DNA microarrays (Created page with " === Citation === Troyanskaya, O., Cantor, M., Sherlock, G., Brown, P., Hastie, T., Tibshirani, R., Botstein, D., and Altman, R. B. (2001). Missing value estimation methods fo...")
- 14:31, 25 February 2020 (diff | hist) . . (+148) . . Literature Studies (→Preprocessing high-throughput data)
- 14:28, 25 February 2020 (diff | hist) . . (+620) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis
- 14:20, 25 February 2020 (diff | hist) . . (+356) . . Fast derivatives of likelihood functionals for ODE based models using adjoint-state method
- 14:16, 25 February 2020 (diff | hist) . . (+7) . . m Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology (→Summary)
- 14:16, 25 February 2020 (diff | hist) . . (+317) . . Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology
- 14:13, 25 February 2020 (diff | hist) . . (+843) . . Fast derivatives of likelihood functionals for ODE based models using adjoint-state method
- 14:12, 25 February 2020 (diff | hist) . . (+1,531) . . N MetaboAnalyst: a web server for metabolomic data analysis and interpretation (Created page with "__NUMBEREDHEADINGS__ === Citation === Xia J, Psychogios N, Young N, Wishart DS. MetaboAnalyst: a web server for metabolomic data analysis and interpretation. Nucleic acids res...") (current)
- 14:12, 25 February 2020 (diff | hist) . . (+104) . . Literature Studies (→Omics Workflows)
- 14:10, 25 February 2020 (diff | hist) . . (+1,216) . . Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology
- 14:07, 25 February 2020 (diff | hist) . . (0) . . Literature Studies (→ODE-based Modelling)
- 14:05, 25 February 2020 (diff | hist) . . (-38) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Further comments and aspects)
- 14:05, 25 February 2020 (diff | hist) . . (-20) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→References)
- 14:04, 25 February 2020 (diff | hist) . . (+1,589) . . N MeltDB: a software platform for the analysis and integration of metabolomics experiment data (Created page with "__NUMBEREDHEADINGS__ === Citation === Neuweger H, Albaum SP, Dondrup M, Persicke M, Watt T, Niehaus K, Stoye J, Goesmann A. MeltDB: a software platform for the analysis and in...") (current)
- 14:04, 25 February 2020 (diff | hist) . . (+81) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Design for Outcome O1)
- 14:03, 25 February 2020 (diff | hist) . . (+125) . . Literature Studies (→Omics Workflows)
- 14:02, 25 February 2020 (diff | hist) . . (+15) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Design for Outcome O1)
- 14:02, 25 February 2020 (diff | hist) . . (-112) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→General aspects)
- 13:59, 25 February 2020 (diff | hist) . . (+30) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→General aspects)
- 13:58, 25 February 2020 (diff | hist) . . (+81) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Outcome O1)
- 13:58, 25 February 2020 (diff | hist) . . (+1,496) . . N Software platform for high-throughput glycomics (Created page with "__NUMBEREDHEADINGS__ === Citation === Vakhrushev SY, Dadimov D, Peter-Katalinic J. Software platform for high-throughput glycomics. Analytical chemistry. 2009 May 1;81(9):3252...") (current)
- 13:57, 25 February 2020 (diff | hist) . . (+83) . . Literature Studies (→Preprocessing high-throughput data)
- 13:56, 25 February 2020 (diff | hist) . . (+1,845) . . N The effects of nonignorable missing data on label-free mass spectrometry proteomics experiments (Created page with "=== Citation === O'Brien JJ, Gunawardena HP, Paulo JA, Chen X, Ibrahim JG, Gygi SP, Qaqish BF (2018). The effects of nonignorable missing data on label-free mass spectrometry...")
- 13:54, 25 February 2020 (diff | hist) . . (+55) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Outcome O1)
- 13:53, 25 February 2020 (diff | hist) . . (-3) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→General aspects)
- 13:51, 25 February 2020 (diff | hist) . . (+4) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→General aspects)
- 13:50, 25 February 2020 (diff | hist) . . (+120) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→General aspects)
- 13:49, 25 February 2020 (diff | hist) . . (-55) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→References)
- 13:48, 25 February 2020 (diff | hist) . . (-1) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→References)
- 13:47, 25 February 2020 (diff | hist) . . (+161) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→General aspects)
- 13:47, 25 February 2020 (diff | hist) . . (+379) . . Fast derivatives of likelihood functionals for ODE based models using adjoint-state method (→Study design and evidence level)
- 13:46, 25 February 2020 (diff | hist) . . (-1) . . Machine learning methods for predictive proteomics (current)
- 13:46, 25 February 2020 (diff | hist) . . (+1,530) . . N Machine learning methods for predictive proteomics (Created page with "__ NUMBEREDHEADINGS__ === Citation === Barla A, Jurman G, Riccadonna S, Merler S, Chierici M, Furlanello C. Machine learning methods for predictive proteomics. Briefings in bi...")
- 13:43, 25 February 2020 (diff | hist) . . (+80) . . Literature Studies (→Omics Workflows)
- 13:39, 25 February 2020 (diff | hist) . . (+31) . . Fast derivatives of likelihood functionals for ODE based models using adjoint-state method (→Study design and evidence level)
- 13:38, 25 February 2020 (diff | hist) . . (0) . . m Performance of objective functions and optimization procedures for parameter estimation in system biology models (→Study design and evidence level) (current)
- 13:38, 25 February 2020 (diff | hist) . . (+458) . . Fast derivatives of likelihood functionals for ODE based models using adjoint-state method (→Study outcomes)
- 13:38, 25 February 2020 (diff | hist) . . (+275) . . Performance of objective functions and optimization procedures for parameter estimation in system biology models
- 13:35, 25 February 2020 (diff | hist) . . (+122) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→General aspects)
- 13:32, 25 February 2020 (diff | hist) . . (-2) . . Fast derivatives of likelihood functionals for ODE based models using adjoint-state method (→Further outcomes)
- 13:30, 25 February 2020 (diff | hist) . . (+7) . . Fast derivatives of likelihood functionals for ODE based models using adjoint-state method (→Outcome O2)
- 13:30, 25 February 2020 (diff | hist) . . (+30) . . Fast derivatives of likelihood functionals for ODE based models using adjoint-state method
- 13:29, 25 February 2020 (diff | hist) . . (-1) . . Data-driven normalization strategies for high-throughput quantitative RT-PCR (current)
- 13:29, 25 February 2020 (diff | hist) . . (+1,571) . . N Data-driven normalization strategies for high-throughput quantitative RT-PCR (Created page with "__ NUMBEREDHEADINGS__ === Citation === Mar JC, Kimura Y, Schroder K, Irvine KM, Hayashizaki Y, Suzuki H, Hume D, Quackenbush J. Data-driven normalization strategies for high-t...")
- 13:28, 25 February 2020 (diff | hist) . . (-36) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Design for Outcome O2)
- 13:27, 25 February 2020 (diff | hist) . . (+105) . . Literature Studies (→Preprocessing high-throughput data)
- 13:27, 25 February 2020 (diff | hist) . . (0) . . Fast derivatives of likelihood functionals for ODE based models using adjoint-state method (→Further comments and aspects)
- 13:27, 25 February 2020 (diff | hist) . . (-1) . . Fast derivatives of likelihood functionals for ODE based models using adjoint-state method (→Design for Outcome O2)
- 13:27, 25 February 2020 (diff | hist) . . (+124) . . A comparison of methods for quantifying prediction uncertainty in systems biology (Undo revision 563 by Bwday (talk)) (Tag: Undo)
- 13:27, 25 February 2020 (diff | hist) . . (+3,543) . . Fast derivatives of likelihood functionals for ODE based models using adjoint-state method
- 13:27, 25 February 2020 (diff | hist) . . (-124) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Design for Outcome O2)
- 13:26, 25 February 2020 (diff | hist) . . (-117) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Design for Outcome O)
- 13:26, 25 February 2020 (diff | hist) . . (+35) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Design for Outcome O1)
- 13:20, 25 February 2020 (diff | hist) . . (+26) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→General aspects)
- 13:19, 25 February 2020 (diff | hist) . . (-106) . . Performance of objective functions and optimization procedures for parameter estimation in system biology models (→Study design and evidence level)
- 13:18, 25 February 2020 (diff | hist) . . (+112) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→General aspects)
- 13:10, 25 February 2020 (diff | hist) . . (+653) . . Performance of objective functions and optimization procedures for parameter estimation in system biology models
- 13:10, 25 February 2020 (diff | hist) . . (-52) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→General aspects)
- 13:06, 25 February 2020 (diff | hist) . . (+1,602) . . N Comprehensive evaluation of untargeted metabolomics data processing software in feature detection, quantification and discriminating marker selection (Created page with "__NUMBEREDHEADINGS__ === Citation === Li Z, Lu Y, Guo Y, Cao H, Wang Q, Shui W. Comprehensive evaluation of untargeted metabolomics data processing software in feature detecti...") (current)
- 13:06, 25 February 2020 (diff | hist) . . (+2) . . Literature Studies (→Preprocessing high-throughput data)
- 13:05, 25 February 2020 (diff | hist) . . (+173) . . Literature Studies (→Preprocessing high-throughput data)
- 13:03, 25 February 2020 (diff | hist) . . (-76) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Further outcomes)
- 13:02, 25 February 2020 (diff | hist) . . (-153) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Outcome O3)
- 13:02, 25 February 2020 (diff | hist) . . (-1) . . Comparison of peak‐picking workflows for untargeted liquid chromatography/high‐resolution mass spectrometry metabolomics data analysis (current)
- 13:02, 25 February 2020 (diff | hist) . . (+1,582) . . N Comparison of peak‐picking workflows for untargeted liquid chromatography/high‐resolution mass spectrometry metabolomics data analysis (Created page with "__ NUMBEREDHEADINGS__ === Citation === Rafiei A, Sleno L. Comparison of peak‐picking workflows for untargeted liquid chromatography/high‐resolution mass spectrometry metab...")
- 13:01, 25 February 2020 (diff | hist) . . (+168) . . Literature Studies (→Preprocessing high-throughput data)
- 12:59, 25 February 2020 (diff | hist) . . (-46) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Outcome O2)
- 12:59, 25 February 2020 (diff | hist) . . (+177) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Outcome O1)
- 12:58, 25 February 2020 (diff | hist) . . (0) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Outcome O3)
- 12:58, 25 February 2020 (diff | hist) . . (+60) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Outcome On)
- 12:56, 25 February 2020 (diff | hist) . . (+1,553) . . N Comparative evaluation of preprocessing freeware on chromatography/mass spectrometry data for signature discovery (Created page with "__NUMBEREDHEADINGS__ === Citation === Coble JB, Fraga CG. Comparative evaluation of preprocessing freeware on chromatography/mass spectrometry data for signature discovery. Jo...") (current)
- 12:55, 25 February 2020 (diff | hist) . . (+143) . . Literature Studies (→Preprocessing high-throughput data)
- 12:55, 25 February 2020 (diff | hist) . . (+11) . . Literature Studies (→Imputation methods for missing values)
- 12:54, 25 February 2020 (diff | hist) . . (+8) . . Literature Studies (→Imputation methods for missing values)
- 12:54, 25 February 2020 (diff | hist) . . (-5) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Outcome O2)
- 12:53, 25 February 2020 (diff | hist) . . (+12) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Outcome O1)
- 12:51, 25 February 2020 (diff | hist) . . (+95) . . Literature Studies (→Imputation methods for missing values)
- 12:50, 25 February 2020 (diff | hist) . . (0) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Outcome O2)
- 12:50, 25 February 2020 (diff | hist) . . (+110) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Outcome O2)
- 12:44, 25 February 2020 (diff | hist) . . (+131) . . Literature Studies (→Preprocessing high-throughput data)
- 12:44, 25 February 2020 (diff | hist) . . (-78) . . Performance of objective functions and optimization procedures for parameter estimation in system biology models (→Study outcomes)
- 12:39, 25 February 2020 (diff | hist) . . (+38) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Outcome O1)
- 12:34, 25 February 2020 (diff | hist) . . (+154) . . Literature Studies (→Omics Workflows)
- 12:32, 25 February 2020 (diff | hist) . . (+14) . . Literature Studies (→Imputation methods for missing values)
- 12:30, 25 February 2020 (diff | hist) . . (+109) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Summary)
- 12:29, 25 February 2020 (diff | hist) . . (+505) . . Performance of objective functions and optimization procedures for parameter estimation in system biology models (→Summary)
- 12:28, 25 February 2020 (diff | hist) . . (+115) . . Literature Studies (→Omics Workflows)
- 12:27, 25 February 2020 (diff | hist) . . (+10) . . Literature Studies (→Omics Workflows)
- 12:26, 25 February 2020 (diff | hist) . . (0) . . Literature Studies (→Omics Workflows)
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