Difference between revisions of "Performance of objective functions and optimization procedures for parameter estimation in system biology models"

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== Paper name ==
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=== Citation ===
 
Andrea Degasperi, Dirk Fey & Boris N. Kholodenko, [https://www.nature.com/articles/s41540-017-0023-2.pdf Performance of objective functions and optimisation procedures for parameter estimation in system biology models], 2017, Systems Biology and Applications volume 3, Article number: 20
 
Andrea Degasperi, Dirk Fey & Boris N. Kholodenko, [https://www.nature.com/articles/s41540-017-0023-2.pdf Performance of objective functions and optimisation procedures for parameter estimation in system biology models], 2017, Systems Biology and Applications volume 3, Article number: 20
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=== Summary ===
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Briefly describe the scope of the paper, i.e. the field of research and/or application.
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=== Study outcomes ===
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List the paper results concerning method comparison and benchmarking:
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==== Outcome O1 ====
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The performance of ...
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Outcome O1 is presented as Figure X in the original publication.
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==== Outcome O2 ====
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...
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Outcome O2 is presented as Figure X in the original publication.
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==== Outcome On ====
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...
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Outcome On is presented as Figure X in the original publication.
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==== Further outcomes ====
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If intended, you can add further outcomes here.
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=== Study design and evidence level ===
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==== General aspects ====
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You can describe general design aspects here.
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The study designs for describing specific outcomes are listed in the following subsections:
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==== Design for Outcome O1 ====
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* The outcome was generated for ...
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* Configuration parameters were chosen ...
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* ...
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==== Design for Outcome O2 ====
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* The outcome was generated for ...
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* Configuration parameters were chosen ...
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* ...
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...
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==== Design for Outcome O ====
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* The outcome was generated for ...
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* Configuration parameters were chosen ...
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* ...
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=== Further comments and aspects ===
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=== References ===
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The list of cited or related literature is placed here.

Revision as of 12:02, 25 February 2020

__ NUMBEREDHEADINGS__

Citation

Andrea Degasperi, Dirk Fey & Boris N. Kholodenko, Performance of objective functions and optimisation procedures for parameter estimation in system biology models, 2017, Systems Biology and Applications volume 3, Article number: 20

Summary

Briefly describe the scope of the paper, i.e. the field of research and/or application.

Study outcomes

List the paper results concerning method comparison and benchmarking:

Outcome O1

The performance of ...

Outcome O1 is presented as Figure X in the original publication.

Outcome O2

...

Outcome O2 is presented as Figure X in the original publication.

Outcome On

...

Outcome On is presented as Figure X in the original publication.

Further outcomes

If intended, you can add further outcomes here.


Study design and evidence level

General aspects

You can describe general design aspects here. The study designs for describing specific outcomes are listed in the following subsections:

Design for Outcome O1

  • The outcome was generated for ...
  • Configuration parameters were chosen ...
  • ...

Design for Outcome O2

  • The outcome was generated for ...
  • Configuration parameters were chosen ...
  • ...

...

Design for Outcome O

  • The outcome was generated for ...
  • Configuration parameters were chosen ...
  • ...

Further comments and aspects

References

The list of cited or related literature is placed here.