Literature Studies

Here outcomes of benchmarking studies from the literature are collected. 
Please extend this list by creating a new page and adding a link below. Use the guidelines described here. The goal is achieving a consensus within the scientific community. 

Results from Literature

ODE-based Modelling

• Hybrid optimization method with general switching strategy for parameter estimation
• Lessons Learned from Quantitative Dynamical Modeling in Systems Biology
• Ways to Fit a PK Model with Some Data Below the Quantification Limit
• ODE parameter inference using adaptive gradient matching with Gaussian processes

High-throughput data preprocessing

2009

• Comparison of Affymetrix data normalization methods using 6,926 experiments across five array generations

2010

• Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

2012

• A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

2014

• [[Normalyzer: A Tool for Rapid Evaluation of Normalization Methods

for Omics Data Sets]]

Feature Selection and Dimension Reduction

2015

• Comparing feature selection methods for highdimensional imbalanced data: identifying rheumatoid arthritis cohorts from routine data

Classification

• Predicting Breast Cancer Survivability Using Data Mining Techniques