User contributions
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- 15:03, 25 February 2020 (diff | hist) . . (+1,604) . . N OpenMS: a flexible open-source software platform for mass spectrometry data analysis (Created page with "__ NUMBEREDHEADINGS__ === Citation === Röst HL, Sachsenberg T, Aiche S, Bielow C, Weisser H, Aicheler F, Andreotti S, Ehrlich HC, Gutenbrunner P, Kenar E, Liang X. OpenMS: a...")
- 15:03, 25 February 2020 (diff | hist) . . (+114) . . Literature Studies (→Omics Workflows)
- 15:01, 25 February 2020 (diff | hist) . . (+2) . . Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology (current)
- 14:58, 25 February 2020 (diff | hist) . . (-1) . . NOREVA: normalization and evaluation of MS-based metabolomics data (current)
- 14:58, 25 February 2020 (diff | hist) . . (+1,544) . . N NOREVA: normalization and evaluation of MS-based metabolomics data (Created page with "__ NUMBEREDHEADINGS__ === Citation === Li B, Tang J, Yang Q, Li S, Cui X, Li Y, Chen Y, Xue W, Li X, Zhu F. NOREVA: normalization and evaluation of MS-based metabolomics data....")
- 14:57, 25 February 2020 (diff | hist) . . (+73) . . Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology
- 14:57, 25 February 2020 (diff | hist) . . (+92) . . Literature Studies (→Preprocessing high-throughput data)
- 14:55, 25 February 2020 (diff | hist) . . (-2) . . Hybrid optimization method with general switching strategy for parameter estimation (→Citation)
- 14:52, 25 February 2020 (diff | hist) . . (+76) . . Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology (→Study design and evidence level)
- 14:50, 25 February 2020 (diff | hist) . . (+18) . . Literature Studies (→Imputation methods for missing values)
- 14:48, 25 February 2020 (diff | hist) . . (+8) . . Literature Studies (→Imputation methods for missing values)
- 14:48, 25 February 2020 (diff | hist) . . (-16) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis (→Material and methods) (current)
- 14:47, 25 February 2020 (diff | hist) . . (+17) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis (→Material and methods)
- 14:46, 25 February 2020 (diff | hist) . . (0) . . Recursive partitioning for missing data imputation in the presence of interaction effects (current)
- 14:46, 25 February 2020 (diff | hist) . . (+1,590) . . N NormalyzerDE: Online Tool for Improved Normalization of Omics Expression Data and High-Sensitivity Differential Expression Analysis (Created page with "__NUMBEREDHEADINGS__ === Citation === Willforss J, Chawade A, Levander F. Normalyzerde: Online tool for improved normalization of omics expression data and high-sensitivity di...")
- 14:46, 25 February 2020 (diff | hist) . . (+217) . . N Recursive partitioning for missing data imputation in the presence of interaction effects (Created page with "--- Citation --- Doove, L., Buuren, S. V., and Dusseldorp, E. (2014). Recursive partitioning for missing data imputation in the presence of interaction effects. Computational...")
- 14:46, 25 February 2020 (diff | hist) . . (+2) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis (→Material and methods)
- 14:46, 25 February 2020 (diff | hist) . . (+164) . . Literature Studies (→Preprocessing high-throughput data)
- 14:45, 25 February 2020 (diff | hist) . . (+447) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis (→Material and methods)
- 14:44, 25 February 2020 (diff | hist) . . (+1,804) . . N Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics (Created page with " === Citation === Webb-Robertson, B.-J. M.; Wiberg, H. K.; Matzke, M. M.; Brown, J. N.; Wang, J.; McDermott, J. E.; Smith, R. D.; Rodland, K. D.; Metz, T. O.; Pounds, J. G.; W...") (current)
- 14:44, 25 February 2020 (diff | hist) . . (-234) . . Benchmark problems for dynamic modeling of intracellular processes (→Outcome O3)
- 14:44, 25 February 2020 (diff | hist) . . (-1) . . Benchmark problems for dynamic modeling of intracellular processes (→Outcome O1)
- 14:43, 25 February 2020 (diff | hist) . . (-2) . . Benchmark problems for dynamic modeling of intracellular processes (→Outcome O2)
- 14:43, 25 February 2020 (diff | hist) . . (+62) . . Benchmark problems for dynamic modeling of intracellular processes (→Summary)
- 14:41, 25 February 2020 (diff | hist) . . (-71) . . Benchmark problems for dynamic modeling of intracellular processes (→Study outcomes)
- 14:41, 25 February 2020 (diff | hist) . . (+162) . . Benchmark problems for dynamic modeling of intracellular processes (→Summary)
- 14:40, 25 February 2020 (diff | hist) . . (+1,690) . . Benchmark problems for dynamic modeling of intracellular processes
- 14:39, 25 February 2020 (diff | hist) . . (+102) . . Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology (→Study outcomes)
- 14:38, 25 February 2020 (diff | hist) . . (+18) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis (→Summary)
- 14:38, 25 February 2020 (diff | hist) . . (+18) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis (→Material and methods)
- 14:37, 25 February 2020 (diff | hist) . . (+34) . . Literature Studies (→Imputation methods for missing values)
- 14:36, 25 February 2020 (diff | hist) . . (+1,365) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis (→Introduction)
- 14:32, 25 February 2020 (diff | hist) . . (+1,547) . . N Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data (Created page with "__NUMBEREDHEADINGS__ === Citation === Tsuji J, Weng Z. Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data....") (current)
- 14:31, 25 February 2020 (diff | hist) . . (-70) . . Missing value estimation methods for DNA microarrays (→Study outcomes)
- 14:31, 25 February 2020 (diff | hist) . . (+1,231) . . N Missing value estimation methods for DNA microarrays (Created page with " === Citation === Troyanskaya, O., Cantor, M., Sherlock, G., Brown, P., Hastie, T., Tibshirani, R., Botstein, D., and Altman, R. B. (2001). Missing value estimation methods fo...")
- 14:31, 25 February 2020 (diff | hist) . . (+148) . . Literature Studies (→Preprocessing high-throughput data)
- 14:28, 25 February 2020 (diff | hist) . . (+620) . . Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis
- 14:20, 25 February 2020 (diff | hist) . . (+356) . . Fast derivatives of likelihood functionals for ODE based models using adjoint-state method
- 14:16, 25 February 2020 (diff | hist) . . (+7) . . m Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology (→Summary)
- 14:16, 25 February 2020 (diff | hist) . . (+317) . . Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology
- 14:13, 25 February 2020 (diff | hist) . . (+843) . . Fast derivatives of likelihood functionals for ODE based models using adjoint-state method
- 14:12, 25 February 2020 (diff | hist) . . (+1,531) . . N MetaboAnalyst: a web server for metabolomic data analysis and interpretation (Created page with "__NUMBEREDHEADINGS__ === Citation === Xia J, Psychogios N, Young N, Wishart DS. MetaboAnalyst: a web server for metabolomic data analysis and interpretation. Nucleic acids res...") (current)
- 14:12, 25 February 2020 (diff | hist) . . (+104) . . Literature Studies (→Omics Workflows)
- 14:10, 25 February 2020 (diff | hist) . . (+1,216) . . Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology
- 14:07, 25 February 2020 (diff | hist) . . (0) . . Literature Studies (→ODE-based Modelling)
- 14:05, 25 February 2020 (diff | hist) . . (-38) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Further comments and aspects)
- 14:05, 25 February 2020 (diff | hist) . . (-20) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→References)
- 14:04, 25 February 2020 (diff | hist) . . (+1,589) . . N MeltDB: a software platform for the analysis and integration of metabolomics experiment data (Created page with "__NUMBEREDHEADINGS__ === Citation === Neuweger H, Albaum SP, Dondrup M, Persicke M, Watt T, Niehaus K, Stoye J, Goesmann A. MeltDB: a software platform for the analysis and in...") (current)
- 14:04, 25 February 2020 (diff | hist) . . (+81) . . A comparison of methods for quantifying prediction uncertainty in systems biology (→Design for Outcome O1)
- 14:03, 25 February 2020 (diff | hist) . . (+125) . . Literature Studies (→Omics Workflows)
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