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- 16:01, 18 February 2022 Analysing microbiome intervention design studies: Comparison of alternative multivariate statistical methods (hist) [1,557 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === Khomich, M., Måge, I., Rud, I., & Berget, I. (2021). Analysing microbiome intervention design studies: Comparison of alternative multiva...")
- 16:00, 18 February 2022 Benchmarking of 16S rRNA gene databases using known strain sequences (hist) [1,567 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === Dixit, K., Davray, D., Chaudhari, D., Kadam, P., Kshirsagar, R., Shouche, Y., ... & Saroj, S. D. (2021). Benchmarking of 16S rRNA gene da...")
- 15:59, 18 February 2022 Evaluation of the microba community profiler for taxonomic profiling of metagenomic datasets from the human gut microbiome (hist) [1,627 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === Parks, D. H., Rigato, F., Vera-Wolf, P., Krause, L., Hugenholtz, P., Tyson, G. W., & Wood, D. L. (2021). Evaluation of the microba commun...")
- 15:57, 18 February 2022 Distribution-based comprehensive evaluation of methods for differential expression analysis in metatranscriptomics (hist) [1,582 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === Cho, H., Liu, C., Tang, B., Lin, B. M., Roach, J., de Aguiar Ribeiro, A., ... & Wu, D. (2021). Distribution-based comprehensive evaluatio...")
- 15:56, 18 February 2022 A benchmark of genetic variant calling pipelines using metagenomic short-read sequencing (hist) [1,576 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === Andreu-Sánchez, S., Chen, L., Wang, D., Augustijn, H. E., Zhernakova, A., & Fu, J. (2021). A benchmark of genetic variant calling pipeli...")
- 15:55, 18 February 2022 LEMMI: a continuous benchmarking platform for metagenomics classifiers (hist) [1,527 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === Seppey, M., Manni, M., & Zdobnov, E. M. (2020). LEMMI: a continuous benchmarking platform for metagenomics classifiers. Genome research,...")
- 15:53, 18 February 2022 Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data (hist) [1,575 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === Calgaro, M., Romualdi, C., Waldron, L., Risso, D., & Vitulo, N. (2020). Assessment of statistical methods from single cell, bulk RNA-seq,...")
- 15:51, 18 February 2022 Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches (hist) [1,548 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === Nearing, J. T., Douglas, G. M., Comeau, A. M., & Langille, M. G. (2018). Denoising the Denoisers: an independent evaluation of microbiome...")
- 15:50, 18 February 2022 Mockrobiota: a public resource for microbiome bioinformatics benchmarking (hist) [1,584 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === Bokulich, N. A., Rideout, J. R., Mercurio, W. G., Shiffer, A., Wolfe, B., Maurice, C. F., ... & Caporaso, J. G. (2016). mockrobiota: a pu...")
- 15:16, 18 February 2022 Benchmark of data processing methods and machine learning models for gut microbiome-based diagnosis of inflammatory bowel disease (hist) [1,667 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === Kubinski R, Djamen-Kepaou J-Y, Zhanabaev T, Hernandez-Garcia A, Bauer S, Hildebrand F, Korcsmaros T, Karam S, Jantchou P, Kafi K and Mart...")
- 15:15, 18 February 2022 Comparative study of classifiers for human microbiome data (hist) [1,496 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === Wang, X. W., & Liu, Y. Y. (2020). Comparative study of classifiers for human microbiome data. Medicine in microecology, 4, 100013. [http...")
- 15:14, 18 February 2022 Comprehensive benchmarking and ensemble approaches for metagenomic classifiers (hist) [1,585 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === McIntyre, A. B., Ounit, R., Afshinnekoo, E., Prill, R. J., Hénaff, E., Alexander, N., ... & Mason, C. E. (2017). Comprehensive benchmark...")
- 14:51, 18 February 2022 Benchmarking Metagenomics Tools for Taxonomic Classification (hist) [1,514 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === Simon, H. Y., Siddle, K. J., Park, D. J., & Sabeti, P. C. (2019). Benchmarking metagenomics tools for taxonomic classification. Cell, 178...")
- 14:47, 18 February 2022 A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling (hist) [1,602 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === D’Amore, R., Ijaz, U. Z., Schirmer, M., Kenny, J. G., Gregory, R., Darby, A. C., ... & Hall, N. (2016). A comprehensive benchmarking st...")
- 14:44, 18 February 2022 Evaluating supervised and unsupervised background noise correction in human gut microbiome data (hist) [1,587 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === Briscoe, L., Balliu, B., Sankararaman, S., Halperin, E., & Garud, N. R. (2022). Evaluating supervised and unsupervised background noise c...")
- 14:38, 18 February 2022 Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases (hist) [1,625 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === Lloréns-Rico, V., Vieira-Silva, S., Gonçalves, P. J., Falony, G., & Raes, J. (2021). Benchmarking microbiome transformations favors exp...")
- 14:33, 18 February 2022 Microbiome differential abundance methods produce different results across 38 datasets (hist) [1,605 bytes] Ckreutz (talk | contribs) (Created page with "__NUMBEREDHEADINGS__ === Citation === Nearing, J. T., Douglas, G. M., Hayes, M. G., MacDonald, J., Desai, D. K., Allward, N., ... & Langille, M. G. (2022). Microbiome differen...")
