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Showing below up to 50 results in range #1 to #50.

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  1. A benchmark of genetic variant calling pipelines using metagenomic short-read sequencing
  2. A comparative study of evaluating missing value imputation methods in label-free proteomics
  3. A comparison of methods for quantifying prediction uncertainty in systems biology
  4. A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling
  5. A general modular framework for gene set enrichment analysis
  6. A systematic study of normalization methods for Infinium 450K methylation data using whole-genome bisulfite sequencing data
  7. Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ
  8. An Automated Pipeline for High-Throughput Label-Free Quantitative Proteomics
  9. An improved algorithm for peak detection in mass spectra based on continuous wavelet transform
  10. Analysing microbiome intervention design studies: Comparison of alternative multivariate statistical methods
  11. Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data
  12. Benchmark of data processing methods and machine learning models for gut microbiome-based diagnosis of inflammatory bowel disease
  13. Benchmark problems for dynamic modeling of intracellular processes
  14. Benchmarking Metagenomics Tools for Taxonomic Classification
  15. Benchmarking Quantitative Performance in Label-Free Proteomics
  16. Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases
  17. Benchmarking of 16S rRNA gene databases using known strain sequences
  18. Benchmarking optimization methods for parameter estimation in large kinetic models
  19. Bioinformatics and Statistics: LC‐MS (/MS) Data Preprocessing for Biomarker Discovery
  20. Chemometric methods in data processing of mass spectrometry-based metabolomics: A review
  21. Comparative evaluation of preprocessing freeware on chromatography/mass spectrometry data for signature discovery
  22. Comparative study of classifiers for human microbiome data
  23. Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16
  24. Comparison of metaheuristic strategies for peakbin selection in proteomic mass spectrometry data
  25. Comparison of peak‐picking workflows for untargeted liquid chromatography/high‐resolution mass spectrometry metabolomics data analysis
  26. Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data
  27. Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
  28. Comprehensive benchmarking of Markov chain Monte Carlo methods for dynamical systems
  29. Comprehensive evaluation of untargeted metabolomics data processing software in feature detection, quantification and discriminating marker selection
  30. Concepts for Bechmarking Studies:
  31. DMR Calling from BSSEQ:
  32. DMRcaller: a versatile R/Bioconductor package for detection and visualization of differentially methylated regions in CpG and non-CpG contexts
  33. DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data
  34. Data-driven normalization strategies for high-throughput quantitative RT-PCR
  35. Data-driven reverse engineering of signaling pathways using ensembles of dynamic models
  36. Data processing has major impact on the outcome of quantitative label-free LC-MS analysis
  37. Defiant: (DMRs: easy, fast, identification and ANnoTation) identifies differentially Methylated regions from iron-deficient rat hippocampus
  38. Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches
  39. Detecting and overcoming systematic bias in high-throughput screening technologies: a comprehensive review of practical issues and methodological solutions
  40. Distribution-based comprehensive evaluation of methods for differential expression analysis in metatranscriptomics
  41. Efficient computation of steady states in large-scale ODE models of biochemical reaction networks
  42. Efficient parameterization of large-scale dynamic models based on relative measurements
  43. Evaluating supervised and unsupervised background noise correction in human gut microbiome data
  44. Evaluation of Derivative-Free Optimizers for Parameter Estimation in Systems Biology
  45. Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data
  46. Evaluation of the microba community profiler for taxonomic profiling of metagenomic datasets from the human gut microbiome
  47. Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data
  48. Fast derivatives of likelihood functionals for ODE based models using adjoint-state method
  49. Funding
  50. Gene set analysis methods: a systematic comparison

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